Missing Weapon Skill Set Points

I currently have all 24 Weapon Skill Points unlocked.

After refunding skill points, I have "lost" 3 of my Weapon Skill Set 2 points. I can count them, even if I refund them all, it only comes up to 21 out of 24 points.

For Weapon Set 1 everything seems normal, as I have 24 out of 24 points available.

I've read around and the bug seems to be known, but what can I do to fix this. Refunding again or logging out doesn't fix it.

I have the differentissue. I have confirmed everything completed quest wise. I have also tried to re-talk to all npc without luck. I am guessing Dark Mists is the cause. I used poe ninja and ai to confirm that I was not being dumb. Unfortunately have not found a missed icon or quest.

character name alfredoForbreakfast
stuck at 22/24 weapon set points
confirmation:
Aggorat done
Yeti done
Hooded One done
Dark Mists completed
no remaining quests