A problem with chests and altars in patch 0.3.1

I've had fewer chests and altars on my maps since patch 0.3.1. Before, I always had more than one chest and altar, but after the patch, I've consistently had one of each on every map. Even though I've taken every node in the atlas tree for their chance. Please fix this as soon as possible.

Sorry, I meant shrines and strongboxes. I'm not a native speaker and wrote this through a translator.