Missing 30 Spirit points from completion of all acts

ref 721,327,905

Finished act 6, but i have IGNAGDUK, the bog witch still highlighed. i have repeatedly killed her and it still now showing as greyed out.

i have removed all my gear and it is showing i have 70 spirits, some how i am missing 30. i have checked the king of the mist in act 1 and i have killed him and it is showing up as greyed. the bog witch in act 3 i have killed and also showing up as greyed.

can anyone please help with this issue.

Having the same issue in act 2 I had 60 spirit 30 from the freythorn boss + 30 from an amulet but after suffling my spirit gems now I only have 30 from the amulet and the freythorn boss is marked as completed.

EDIT: found out one of my ascendancy passives was negating spirit from gear so that explains the missing 30 spirit